Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs281409 chr19:49233438 C/T 2.36E-6 114 11.58 53.27 38.13 KM Plot
THYM rs2816060 chr1:18903563 A/T 0.000121 119 22.6 50.13 41.22 KM Plot
THYM rs2820624 chr10:1542940 G/A 0.000185 117 39.5 42.82 25.83 KM Plot
THYM rs2820625 chr10:1542977 A/G 0.000185 117 39.5 42.82 25.83 KM Plot
THYM rs28372763 chr5:149877270 C/T 1.5E-8 118 41.22 35.13 12.63 KM Plot
THYM rs28375959 chr18:33601534 T/G 0.000136 119 49.4 35 51.23 KM Plot
THYM rs28378040 chr2:30666831 G/A 1.48E-8 118 37.37 50.1 33.13 KM Plot
THYM rs28379448 chr18:33604364 C/A 0.000136 119 49.4 35 51.23 KM Plot
THYM rs2838504 chr21:45583633 C/T 0.000116 118 38.58 51.23 28.43 KM Plot
THYM rs28385580 chr21:45458603 A/G 0.000107 119 38.58 50.65 28.43 KM Plot
THYM rs28390296 chr7:29687091 C/T 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs2839638 chr21:44564105 A/G 0.000199 119 46.6 35 40.67 KM Plot
THYM rs28396546 chr18:33639024 T/C 0.000136 119 49.4 35 51.23 KM Plot
THYM rs28405154 chr7:29693057 C/A 4.29E-13 119 38.13 46.27 6 KM Plot
THYM rs28415620 chr7:29701104 T/C 5.23E-13 118 37.63 46.27 6 KM Plot